1. Simple SIR model with gamma distributed lengths of stay | 2. How the algorithm work? | 3. Waiting time distribution | 4. Multiple transitions from a compartment | 5. Additional examples | Example 1 | Example 2

Migrate deSolve code to denim | Original code in deSolve | Model definition | Model configurations | Simulation | Compare output

Model definition in denim | Denim DSL | Define a classic SIR model | Time varying transition | R list

1. Transition to multiple states in denim | 2. Multinomial in denim | 2.1. Model definition | Proportion normalization | 2.2. Example model | Model definition in denim | Equivalent model definition in deSolve | Run simulation and compare | 3. Competing risks in denim | 3.1. Model definition | 3.2. Example model

Non-parametric vs parametric | Example 1 | Example 2