Package: denim 1.0.0.9000

Anh Phan

denim: Generate and Simulate Deterministic Discrete-Time Compartmental Models

R package to build and simulate deterministic discrete-time compartmental models that can be non-Markov. Length of stay in each compartment can be defined to follow a parametric distribution (d_exponential(), d_gamma(), d_weibull(), d_lognormal()) or a non-parametric distribution (nonparametric()). Other supported types of transition from one compartment to another includes fixed transition (constant()), multinomial (multinomial()), fixed transition probability (transprob()).

Authors:Thinh Ong [aut, cph], Anh Phan [aut, cre], Marc Choisy [aut], Niels Lohman [ctb], Bjoern Hoehrmann [ctb], Florian Loitsch [ctb], Ingo Berg [ctb]

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denim.pdf |denim.html
denim/json (API)
NEWS

# Install 'denim' in R:
install.packages('denim', repos = c('https://thinhong.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/thinhong/denim/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

5.32 score 1 stars 5 scripts 494 downloads 10 exports 33 dependencies

Last updated 5 months agofrom:9c93166cb9. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 08 2024
R-4.5-win-x86_64OKOct 08 2024
R-4.5-linux-x86_64OKOct 08 2024
R-4.4-win-x86_64OKOct 08 2024
R-4.4-mac-x86_64OKOct 08 2024
R-4.4-mac-aarch64OKOct 08 2024
R-4.3-win-x86_64OKOct 08 2024
R-4.3-mac-x86_64OKOct 08 2024
R-4.3-mac-aarch64OKOct 08 2024

Exports:constantd_exponentiald_gammad_lognormald_weibullmathexprmultinomialnonparametricsimtransprob

Dependencies:briocallrclicrayondescdiffobjdigestevaluatefansifsgluejsonlitelifecyclemagrittrpillarpkgbuildpkgconfigpkgloadpraiseprocessxpsR6Rcpprematch2rlangrprojroottestthattibbleutf8vctrsviridisLitewaldowithr

denim vs deSolve

Rendered fromdenim_vs_deSolve.Rmdusingknitr::rmarkdownon Oct 08 2024.

Last update: 2024-05-29
Started: 2024-05-29

denim: deterministic discrete-time model with memory

Rendered fromdenim.Rmdusingknitr::rmarkdownon Oct 08 2024.

Last update: 2024-05-29
Started: 2022-03-24